PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031555.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 278aa    MW: 29937.4 Da    PI: 7.0612
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031555.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1128.6e-3534118286
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                  a+k+++++++h kv+gR+RR+R++a+caar+F+L++eL +++d++ti+WLlqqa+p+i++ tgt++++as+    +   +s++ +s
  CCG031555.1  34 APKRSSNKDRHKKVEGRGRRIRIPALCAARIFQLTRELEHKSDGETIQWLLQQAEPSIIAVTGTGTIPASALaA-AGACVSEQGDS 118
                  789******************************************************************77742.33333333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-2939131IPR005333Transcription factor, TCP
PROSITE profilePS5136925.0974094IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSENNISSNN KKPAEIEDFQ NMIADKDDSK KKLAPKRSSN KDRHKKVEGR GRRIRIPALC  60
AARIFQLTRE LEHKSDGETI QWLLQQAEPS IIAVTGTGTI PASALAAAGA CVSEQGDSVS  120
TGLHAKMEGL GPGVTGSRDR NDWSMTNTKL GISNVATGVW PSGGGIGLGF VPNSGQSTST  180
FGNENSSTLP KYGFQGAEFP NINMGLMSFY SMFSGTNQQL PGLELGLSQD GHSAMLNPQA  240
LSPFYHQMVQ GRGVLNSLNQ EKLQEQPPDK DDSQESRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020810.10.0PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD57e-66TCP20_ARATH; Transcription factor TCP20
TrEMBLB9GZD61e-180B9GZD6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16630.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-66TCP family protein